Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015876401.1_cds_XP_016436088.1_31984
CDS Infomation

[gene=LOC107762252] [db_xref=GeneID:107762252] [protein=probable zinc metallopeptidase EGY3, chloroplastic isoform X4] [protein_id=XP_016436088.1] [location=complement(join(30885..30919,31059..31213,31776..32014,32453..32677,33155..33352,33804..34382))] [gbkey=CDS]
Sequence

ATGGCTACTCTTTGTGCTACTTCATGTTCTTCATTTTCCAAATACTCCTCAATTTGCCGA
AAGACCCACTTCTCATTTTCCTTATTTTCCACTTACAACCCAAAAAGATTGAATTTTTGT
GTTCCTAATGGAAAAAGATTGAATTTTTATGTTCCTAATAGAAAAAGATTGAATTTTTCT
GTTAAAGCTGAGAAAGAAGATGAACCCTCATCTTCTTCTGTGGCTGTAGCTTCAGAAGAA
AATGATTCATCGAAAAATGATAGTCATATCGAAGAGGGTGAGAGTGGTCCTCAGCATGAG
TCAGAATCAGAGGCTGAGAGAATAGAAAGGGAGAAACAACAAGAAATGGATTGGAAAACT
GATGAAGAATTCAAGAAGTTTATGGGGAATCCCTCAATTGAGACTGCTATAAAGCTTGAG
AAAAAGAGAACAGATAGGAAGCTGAAAGAGCTTGACAGTGAAACCAGTAGCAACCCACTT
GTGGGTTTCTTTAAGAATTTGGTTCGTGATAGTTTGTCCAGAGAGAAGGAAAGGTTAGAG
AAAGCAGAGGAGGCTTTTGTAGCTCTCGATCTTAACAAGCTAAGGAATTGTTTTGGCTTT
GATACGTTCTTCGCAACTGATGTGAGGAGATTTGGAGATGGGGGAATTTTCATTGGAAAT
TTGAGAAGGCCTATTGATGAAGTAATTCCCATATTAGAGAAAAAGTTATCGGATGCTGCA
GGAAGGGAGGTCGTTTTGTGGTTTATGGAGGAAAAGACAAATGATATTGTAAAACAGGCT
TGTGTGGTACAACCCAAGTCAGAAATGGATCTTCAATTTGAATCAACCAAATTAAGTACT
CCTTCAGGTTACATCAGTGCGGTATCTTTGGCTGTAACAACTTTTGGCACTATTGCTTTG
ACCAGTGGTTTCTTCCTTAAGCCTGATGCAATGATTGATGATTACTTGGCCAACGTTGTT
CCTCTTTTTGGTGGCTTCTTGACCATTTTGGCAGTTTCAGAGGTAACCACAAGAGTAACT
GCTGCACGCTATGGTGTCAAACTTAGTCCATCTTTTCTTGTCCCATCCAATTGGACTGGT
TGCCTGGGTGTTATGAATAACTACGAGTCCCTGCTACCAAATAAGAAGGCTTTATTTGAT
ATTCCAGTTGCTCGTACAGCAAGTGCGTACTTGACATCACTAATGCTTGCAATTGCTGCT
TTTATCGCTGATGGAAGCTTTAATGGAGGTGACAATGCACTGTACATACGACCTCAGTTC
TTCTATAATAATCCTTTGTTCTCCTTCATTCAATATGTTGTTGGGCCATATACTGATGAT
CTTGGGAATGTGCTGCCTTATGCTGTTGAAGGTGTGGGAGTACCAGTTGATCCCCTTGCT
TTTGCTGGACTTTTAGTGTGTTCCCAGCTAAACAAAAAGCATTCAATTTAG

Peptide Sequence

PEP ID

XP_016436088.1
PEP Infomation

PREDICTED: probable zinc metallopeptidase EGY3, chloroplastic isoform X4 [Nicotiana tabacum]
Sequence

MATLCATSCSSFSKYSSICRKTHFSFSLFSTYNPKRLNFCVPNGKRLNFYVPNRKRLNFS
VKAEKEDEPSSSSVAVASEENDSSKNDSHIEEGESGPQHESESEAERIEREKQQEMDWKT
DEEFKKFMGNPSIETAIKLEKKRTDRKLKELDSETSSNPLVGFFKNLVRDSLSREKERLE
KAEEAFVALDLNKLRNCFGFDTFFATDVRRFGDGGIFIGNLRRPIDEVIPILEKKLSDAA
GREVVLWFMEEKTNDIVKQACVVQPKSEMDLQFESTKLSTPSGYISAVSLAVTTFGTIAL
TSGFFLKPDAMIDDYLANVVPLFGGFLTILAVSEVTTRVTAARYGVKLSPSFLVPSNWTG
CLGVMNNYESLLPNKKALFDIPVARTASAYLTSLMLAIAAFIADGSFNGGDNALYIRPQF
FYNNPLFSFIQYVVGPYTDDLGNVLPYAVEGVGVPVDPLAFAGLLVCSQLNKKHSI

Transcript Sequence

Gene sequence data has not been registered.